TANRIC Quick Tutorial
Sep. 6, 2014
Outline
Key Features
- Comprehensively characterize the expression profiles of >12,000 annotated lncRNAs over 8,000 tumor samples of ~20 TCGA cancer types
- Allow for querying of the expression profile of user-defined genomic regions (this feature is critical since the annotation of human lncRNAs is still incomplete and rough)
- Interactively analyze lncRNAs of interest with other TCGA genomic/proteomic/epigenomic and clinical data (e.g., patient survival) both within a tumor type and across tumor types
- Include other non-TCGA large-scale cancer RNA-seq data, allowing researchers to independently validate a pattern of interest
Data Sources
- TCGA: The Cancer Genome Atlas
- CCLE: Cancer Cell Line Encyclopedia
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Other
- CCRCC (Japan)
- GBM (China)
- LUAD (Korea)
Data Portal Flowchart
